InfoScan
A software to Identify Novel transcripts FrOm SCRNA-Seq data and sp Atial tra Nscriptome data.
In this study, a multi-platform visualization software InfoScan was developed, which can accurately identify existing and new transcripts in single-cell RNA-Seq data, and evaluate their coding ability by machine learning method. In addition, InfoScan can also integrate the information of the spatial transcriptome to elucidate the spatiotemporal specificity of these transcripts. InfoScan is dedicated to mining the cell-specific profile of these novel transcripts, and performs grouping comparisons and cell type inference based on mRNA and long non-coding RNA, respectively. In addition, we can also predict the function of novel transcripts in cells based on co-expression analysis.
The flow chart below depicts the different tool modules that are currently available.
